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@(@\newcommand{\B}[1]{ {\bf #1} } \newcommand{\R}[1]{ {\rm #1} } \newcommand{\W}[1]{ \; #1 \; }@)@ This is dismod_at-20221105 documentation: Here is a link to its current documentation .
Changes and Additions to Dismod_at During 2022

mm-dd

11-03
Add the binomial distribution wish list item.

10-14
Advance the dock_dismod_at.sh at_cascade_version to 2022.10.14 You should build the new at_cascade image.

09-16
  1. Change copyright and license declaration to SPDX format.
  2. Change tabs to 3 spaces.


08-27
Advance the dock_dismod_at.sh dismod_at_version to 20220826 and at_cascade_version to 2022.8.27. You should build the new dismod_at image before the at_cascade image.

08-26
  1. Remove rel_tol argument to average_integrand because testing with user_average_integrand.py indicates that it does not work; i.e., there is a problem with scipi.integrate.ode.
  2. Change the average_integrand integrator to use lsoda (which switch automatically switches between stiff and non-stiff).


08-15
Add the optional rel_tol argument to the average_integrand function.

05-19
Add build to the list of required python3 packages.

05-18
Advance to cppad_mixed-20220518. This makes the cppad-20220518 available.

05-02
Add the optional at_cascade.image to dock_dismod_at.sh.

05-01
Advance the dock_dismod_at.sh dismod_at_version to 20220421. You should rebuild all the images for this update.

04-21
Advance to cppad_mixed-20220421. This makes the cppad-20220421 available.

04-19
  1. Advance to cppad_mixed-20220419 which will include the CppAD example atomic ODE solver. We plan to try using this solver to reduce the dismod_at memory requirements.
  2. Add a derivation of the prevalence only ode .
  3. Add age to error message when prevalence cannot be calculated.


04-05
The user_trapezoidal.py example was added.

API Change
The system_command_prc default value for return_stdout was changed from False to True. This provides compatibility with the way system_command_prc used to function before the return_stdout argument was added.

04-04
Add the trapezoidal method as an option for solving the ODE. This option's name should be changed from rate_case to ode_method.

03-23
Advance to cppad_mixed-20220323 which will in turn install cppad-20220323.

03-19
Balancing covariates was added to the hold_out command; see the new user_hold_out_2.py example.

03-11
  1. In plot_curve , find a way around Matplotlib bug when there are lots of figures. This sometimes caused a python crash with an IO error.
  2. Fix setting of C compiler in run_cmake.sh .


03-08
  1. Advance to cppad_mixed-20220304 (more work on macOS homebrew problem).
  2. Fix linking suitesparse (on some macOS homebrew systems).


03-04
  1. Advance to cppad_mixed-20220304. This fixes some problems with the install on macOS with homebrew.
  2. Fix a problem with the setting of the C++ compiler using specific_compiler .
  3. Make some improvements to data_density_command documentation.


02-17
Move the value columns fit_value , start, scale, truth, sam_avg, and sam_std to the left in the variable.csv file.

02-08
Change from using distutils.core.setup to using pip to install the python part of dismod_at; see install .

02-05
Advance to cppad_mixed-20220205 as part of removing the need to set LD_LIBRARY_PATH for the install to work.

01-23
The debug version would mistakenly print a warning message about mu + eta being less than or equal zero. This was a mistake when computing log scaled difference priors because the mean mu of the difference does not appear inside the log term; see difference .

01-22
Add fact that null is the default value for lower and upper to the documentation for the create_database prior_table .
Input File: omh/whats_new/2022.omh