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@(@\newcommand{\B}[1]{ {\bf #1} } \newcommand{\R}[1]{ {\rm #1} } \newcommand{\W}[1]{ \; #1 \; }@)@ This is dismod_at-20221105 documentation: Here is a link to its current documentation .
The Prevalence Only ODE

Theorem
Proof
Advantage
Integrands
S and C

Theorem
If @(@ S @)@ and @(@ C @)@ satisfy the dismod_at ordinary differential equation then prevalence @(@ P = C / (S + C) @)@ satisfies @[@ P' = + \iota - ( \iota + \rho + \chi ) P + \chi P^2 @]@

Proof
Suppose that @(@ S(a) @)@ and @(@ C(a) @)@ satisfy the dismod_at ordinary differential equation @[@ \begin{array}{rrr} S' =& - ( \iota + \omega ) S & + \rho C \\ C' =& + \iota S & - ( \rho + \chi + \omega ) C \end{array} @]@ It follows that @[@ (S + C)' = - \omega S - ( \omega + \chi ) C @]@ Using @(@ C = (S + C) P @)@, we also have @[@ \begin{array}{rcl} C' & = & (S + C)' P + (S + C) P' \\ (S + C) P' & = & C' - (S + C)' P \\ (S + C) P' & = & + \iota S - ( \rho + \chi + \omega ) C + \omega S P + ( \omega + \chi ) C P \\ P' & = & + \iota (1 - P) - ( \rho + \chi + \omega ) P + \omega (1 - P) P + ( \omega + \chi ) P^2 \\ P' & = & + \iota - ( \iota + \rho + \chi ) P + \chi P^2 \end{array} @]@

Advantage
One advantage of this approach, over the original ODE in @(@ (S, C) @)@, is that the solution is stable as @(@ S + C \rightarrow 0 @)@. The @(@ (S, C) @)@ approach computes @(@ P = C / (S + C) @)@.

Integrands
All of the current integrands, except for susceptible and withC can be computed from @(@ P @)@ (given that the rates are inputs to the ODE).

S and C
If we know all cause mortality @(@ \alpha = \omega + \chi P @)@, once we have solved for @(@ P @)@, we can compute @(@ \omega = \alpha - \chi P @)@. Furthermore @[@ (S + C)' = - \alpha (S + C) @]@ We can also compute @(@ S + C @)@, and @(@ C = P (S + C) @)@, @(@ S = (1 - P)(S + C) @)@.
Input File: omh/math/prevalence_ode.omh